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Methane dynamics within salt marshes are complex because vegetation types, temperature, oscillating water levels, and changes in salinity and redox conditions influence CH₄production, consumption, oxidation, and emissions. These non‐linear and complex interactions among variables affect the traditionally expected functional relationships and present challenges for interpreting and developing process‐based models. We employed empirical dynamic modeling (EDM) and convergent cross mapping (CCM) as a novel approach for characterizing seasonal/multiday and diurnal CH₄dynamics by inferring causal variables, lags, and interconnections among multiple biophysical variables within a temperate salt marsh using 5 years of eddy covariance data. EDM/CCM is a nonparametric approach capable of quantifying the coupling between variables while determining time scales where variable interactions are the most relevant. We found that gross primary productivity, tidal creek dissolved oxygen, and temperature were important for seasonal/multiday dynamics (rho = 0.73–0.80), while water level was most important for diurnal dynamics during both the growing and dormancy phenoperiods (rho = 0.72 and 0.56, respectively). Lags for the top‐ranked variables (i.e., gross primary productivity, dissolved oxygen, temperature, water level) occurred between 1 and 5 weeks at the seasonal scale and 1–24 hr at the diurnal scale. The EDM had high prediction capabilities for intra‐/inter‐seasonal patterns and annual CH₄sums but had limitations in representing large, infrequent fluxes. Results highlight the importance of non‐linearity, drivers, lag times, and interconnections among multiple biophysical variables that regulate CH₄fluxes in tidal wetlands. This research introduces a novel approach to examining CH₄fluxes, which will aid in evaluating current paradigms in wetlands and other ecosystems.

 

Abstract Wetland methane (CH 4 ) emissions ( $${F}_{{{CH}}_{4}}$$ F C H 4 ) are important in global carbon budgets and climate change assessments. Currently, $${F}_{{{CH}}_{4}}$$ F C H 4 projections rely on prescribed static temperature sensitivity that varies among biogeochemical models. Meta-analyses have proposed a consistent $${F}_{{{CH}}_{4}}$$ F C H 4 temperature dependence across spatial scales for use in models; however, site-level studies demonstrate that $${F}_{{{CH}}_{4}}$$ F C H 4 are often controlled by factors beyond temperature. Here, we evaluate the relationship between $${F}_{{{CH}}_{4}}$$ F C H 4 and temperature using observations from the FLUXNET-CH 4 database. Measurements collected across the globe show substantial seasonal hysteresis between $${F}_{{{CH}}_{4}}$$ F C H 4 and temperature, suggesting larger $${F}_{{{CH}}_{4}}$$ F C H 4 sensitivity to temperature later in the frost-free season (about 77% of site-years). Results derived from a machine-learning model and several regression models highlight the importance of representing the large spatial and temporal variability within site-years and ecosystem types. Mechanistic advancements in biogeochemical model parameterization and detailed measurements in factors modulating CH 4 production are thus needed to improve global CH 4 budget assessments. 

This paper describes the formation of, and initial results for, a new FLUXNET coordination network for ecosystem-scale methane (CH 4 ) measurements at 60 sites globally, organized by the Global Carbon Project in partnership with other initiatives and regional flux tower networks. The objectives of the effort are presented along with an overview of the coverage of eddy covariance (EC) CH 4 flux measurements globally, initial results comparing CH 4 fluxes across the sites, and future research directions and needs. Annual estimates of net CH 4 fluxes across sites ranged from −0.2 ± 0.02 g C m –2 yr –1 for an upland forest site to 114.9 ± 13.4 g C m –2 yr –1 for an estuarine freshwater marsh, with fluxes exceeding 40 g C m –2 yr –1 at multiple sites. Average annual soil and air temperatures were found to be the strongest predictor of annual CH 4 flux across wetland sites globally. Water table position was positively correlated with annual CH 4 emissions, although only for wetland sites that were not consistently inundated throughout the year. The ratio of annual CH 4 fluxes to ecosystem respiration increased significantly with mean site temperature. Uncertainties in annual CH 4 estimates due to gap-filling and random errors were on average ±1.6 g C m –2 yr –1 at 95% confidence, with the relative error decreasing exponentially with increasing flux magnitude across sites. Through the analysis and synthesis of a growing EC CH 4 flux database, the controls on ecosystem CH 4 fluxes can be better understood, used to inform and validate Earth system models, and reconcile differences between land surface model- and atmospheric-based estimates of CH 4 emissions. 

Abstract. Methane (CH4) emissions from natural landscapes constituteroughly half of global CH4 contributions to the atmosphere, yet largeuncertainties remain in the absolute magnitude and the seasonality ofemission quantities and drivers. Eddy covariance (EC) measurements ofCH4 flux are ideal for constraining ecosystem-scale CH4emissions due to quasi-continuous and high-temporal-resolution CH4flux measurements, coincident carbon dioxide, water, and energy fluxmeasurements, lack of ecosystem disturbance, and increased availability ofdatasets over the last decade. Here, we (1) describe the newly publisheddataset, FLUXNET-CH4 Version 1.0, the first open-source global dataset ofCH4 EC measurements (available athttps://fluxnet.org/data/fluxnet-ch4-community-product/, last access: 7 April 2021). FLUXNET-CH4includes half-hourly and daily gap-filled and non-gap-filled aggregatedCH4 fluxes and meteorological data from 79 sites globally: 42freshwater wetlands, 6 brackish and saline wetlands, 7 formerly drainedecosystems, 7 rice paddy sites, 2 lakes, and 15 uplands. Then, we (2) evaluate FLUXNET-CH4 representativeness for freshwater wetland coverageglobally because the majority of sites in FLUXNET-CH4 Version 1.0 arefreshwater wetlands which are a substantial source of total atmosphericCH4 emissions; and (3) we provide the first global estimates of theseasonal variability and seasonality predictors of freshwater wetlandCH4 fluxes. Our representativeness analysis suggests that thefreshwater wetland sites in the dataset cover global wetland bioclimaticattributes (encompassing energy, moisture, and vegetation-relatedparameters) in arctic, boreal, and temperate regions but only sparselycover humid tropical regions. Seasonality metrics of wetland CH4emissions vary considerably across latitudinal bands. In freshwater wetlands(except those between 20∘ S to 20∘ N) the spring onsetof elevated CH4 emissions starts 3 d earlier, and the CH4emission season lasts 4 d longer, for each degree Celsius increase in meanannual air temperature. On average, the spring onset of increasing CH4emissions lags behind soil warming by 1 month, with very few sites experiencingincreased CH4 emissions prior to the onset of soil warming. Incontrast, roughly half of these sites experience the spring onset of risingCH4 emissions prior to the spring increase in gross primaryproductivity (GPP). The timing of peak summer CH4 emissions does notcorrelate with the timing for either peak summer temperature or peak GPP.Our results provide seasonality parameters for CH4 modeling andhighlight seasonality metrics that cannot be predicted by temperature or GPP(i.e., seasonality of CH4 peak). FLUXNET-CH4 is a powerful new resourcefor diagnosing and understanding the role of terrestrial ecosystems andclimate drivers in the global CH4 cycle, and future additions of sitesin tropical ecosystems and site years of data collection will provide addedvalue to this database. All seasonality parameters are available athttps://doi.org/10.5281/zenodo.4672601 (Delwiche et al., 2021).Additionally, raw FLUXNET-CH4 data used to extract seasonality parameterscan be downloaded from https://fluxnet.org/data/fluxnet-ch4-community-product/ (last access: 7 April 2021), and a completelist of the 79 individual site data DOIs is provided in Table 2 of this paper. 

Abstract. Plant transpiration links physiological responses ofvegetation to water supply and demand with hydrological, energy, and carbonbudgets at the land–atmosphere interface. However, despite being the mainland evaporative flux at the global scale, transpiration and its response toenvironmental drivers are currently not well constrained by observations.Here we introduce the first global compilation of whole-plant transpirationdata from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021).We harmonized and quality-controlled individual datasets supplied bycontributors worldwide in a semi-automatic data workflow implemented in theR programming language. Datasets include sub-daily time series of sap flowand hydrometeorological drivers for one or more growing seasons, as well asmetadata on the stand characteristics, plant attributes, and technicaldetails of the measurements. SAPFLUXNET contains 202 globally distributeddatasets with sap flow time series for 2714 plants, mostly trees, of 174species. SAPFLUXNET has a broad bioclimatic coverage, withwoodland/shrubland and temperate forest biomes especially well represented(80 % of the datasets). The measurements cover a wide variety of standstructural characteristics and plant sizes. The datasets encompass theperiod between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data areavailable for most of the datasets, while on-site soil water content isavailable for 56 % of the datasets. Many datasets contain data for speciesthat make up 90 % or more of the total stand basal area, allowing theestimation of stand transpiration in diverse ecological settings. SAPFLUXNETadds to existing plant trait datasets, ecosystem flux networks, and remotesensing products to help increase our understanding of plant water use,plant responses to drought, and ecohydrological processes. SAPFLUXNET version0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The“sapfluxnetr” R package – designed to access, visualize, and processSAPFLUXNET data – is available from CRAN.